PLANT LIFE: UNIFYING PRINCIPLES
OVERVIEW OF PLANT STRUCTURE
Plant Cells Are Surrounded by Rigid Cell Walls
New Cells Are Produced by Dividing Tissues Called Meristems
Three Major Tissue Systems Make Up the Plant Body
Biological Membranes Are Phospholipid Bilayers That Contain Proteins
The Nucleus Contains Most of the Genetic Material of the Cell
Protein Synthesis Involves Transcription and Translation
The Endoplasmic Reticulum Is a Network of Internal Membranes
Secretion of Proteins from Cells Begins with the Rough ER
Proteins and Polysaccharides for Secretion Are Processed in the Golgi Apparatus
The Central Vacuole Contains Water and Solutes
Mitochondria and Chloroplasts Are Sites of Energy Conversion
Mitochondria and Chloroplasts Are Semiautonomous Organelles
Different Plastid Types Are Interconvertible
Microbodies Play Specialized Metabolic Roles in Leaves and Seeds
Oleosomes Are Lipid-Storing Organelles
Plant Cells Contain Microtubules, Microfilaments, and Intermediate Filaments
Microtubules and Microfilaments Can Assemble and Disassemble
Microtubules Function in Mitosis and Cytokinesis
Microfilaments Are Involved in Cytoplasmic Streaming and in Tip Growth
Intermediate Filaments Occur in the Cytosol and Nucleus of Plant Cells
Each Phase of the Cell Cycle Has a Specific Set of Biochemical and Cellular Activities
The Cell Cycle Is Regulated by Protein Kinases
There Are Two Types of Plasmodesmata: Primary and Secondary
Plasmodesmata Have a Complex Internal Structure
One point one. The Plant Kingdom The major groups of the plant kingdom are surveyed and described.
One point three. Plant Tissue Systems: Dermal, Ground, and Vascular
One point four. The Structures of Chloroplast Glycosylglycerides The chemical structures of the chloroplast lipids are illustrated.
Details of the production of the cell plate during cytokinesis in plants are described.
Energy Flow through Living Systems
The First Law: The Total Energy Is Always Conserved
Each Type of Energy Is Characterized by a Capacity Factor and a Potential Factor
The Direction of Spontaneous Processes
The Second Law: The Total Entropy Always Increases
A Process Is Spontaneous If AS for the System and Its Surroundings Is Positive
Free Energy and Chemical Potential
AG Is Negative for a Spontaneous Process at Constant Temperature and Pressure
The Value of AG Is a Function of the Displacement of the Reaction from Equilibrium
The Enthalpy Change Measures the Energy Transferred as Heat
The Electrochemical Potential
Transport of an Uncharged Solute against Its Concentration Gradient Decreases the Entropy of the System
The Membrane Potential Is the Work That Must Be Done to Move an Ion from One Side of the Membrane to the Other
The Electrochemical-Potential Difference, 4 f, Includes Both Concentration and Electric Potentials
Enzymes: The Catalysts of Life
Proteins Are Chains of Amino Acids Joined by Peptide Bonds
Protein Structure Is Hierarchical
Enzymes Are Highly Specific Protein Catalysts
Enzymes Lower the Free-Energy Barrier between Substrates and Products
Catalysis Occurs at the Active Site
A Simple Kinetic Equation Describes an Enzyme- Catalyzed Reaction
Enzymes Are Subject to Various Kinds of Inhibition
pH and Temperature Affect the Rate of Enzyme- Catalyzed Reactions
Cooperative Systems Increase the Sensitivity to Substrates and Are Usually Allosteric
The Kinetics of Some Membrane Transport Processes Can Be Described by the Michaelis-Menten Equation
Enzyme Activity Is Often Regulated
THE STRUCTURE AND PROPERTIES OF WATER
The Polarity of Water Molecules Gives Rise to Hydrogen Bonds
The Polarity of Water Makes It an Excellent Solvent
The Thermal Properties of Water Result from Hydrogen Bonding
The Cohesive and Adhesive Properties of Water Are Due to Hydrogen Bonding
Water Has a High Tensile Strength
WATER TRANSPORT PROCESSES
Diffusion is the movement of molecules by random thermal agitation
Diffusion is rapid over short distances but extremely slow over long distances.
Pressure-driven bulk flow drives long-distance water transport.
Osmosis Is Driven by a Water Potential Gradient
The Chemical Potential of Water Represents the Free-Energy Status of Water
Three Major Factors Contribute to Cell Water Potential
Water Enters the Cell along a Water Potential Gradient
Water Can Also Leave the Cell in Response to a Water Potential Gradient
Small Changes in Plant Cell Volume Cause Large Changes in Turgor Pressure
Water Transport Rates Depend on Driving Force and Hydraulic Conductivity
The Water Potential Concept Helps Us Evaluate the Water Status of a Plant
The Components of Water Potential Vary with Growth Conditions and Location within the Plant
Three point one Calculating Capillary Rise
Three point two Calculating Half-Times of Diffusion
Three point three Alternative Conventions for Components of Water Potential
Three point four The Matric Potential
Three point five Measuring Water Potential
Three point six Understanding Hydraulic Conductivity
Three point seven Wilting and Plasmolysis
A Negative Hydrostatic Pressure in Soil Water Lowers Soil Water Potential
Water Moves through the Soil by Bulk Flow
WATER ABSORPTION BY ROOTS
Let's consider how water moves within the root, and the factors that determine the rate of water uptake into the root.
Solute Accumulation in the Xylem Can Generate "Root Pressure"
WATER TRANSPORT THROUGH THE XYLEM
The Xylem Consists of Two Types of Tracheary Elements
Water Movement through the Xylem Requires Less Pressure Than Movement through Living Cells
What Pressure Difference Is Needed to Lift Water 100 Meters to a Treetop?
The Cohesion-Tension Theory Explains Water Transport in the Xylem
Xylem Transport of Water in Trees Faces Physical Challenges
Plants Minimize the Consequences of Xylem Cavitation
Water Evaporation in the Leaf Generates a Negative Pressure in the Xylem
WATER MOVEMENT FROM THE LEAF TO THE ATMOSPHERE
The Driving Force for Water Loss Is the Difference in Water Vapor Concentration
Water Loss Is Also Regulated by the Pathway Resistances
Stomatal Control Couples Leaf Transpiration to Leaf Photosynthesis
The Cell Walls of Guard Cells Have Specialized Features
An Increase in Guard Cell Turgor Pressure Opens the Stomata
The Transpiration Ratio Measures the Relationship between Water Loss and Carbon Gain
OVERVIEW: THE SOIL-PLANT-ATMOSPHERE CONTINUUM
4.2 Soil Hydraulic Conductivity and Water Potential
4.3 Root Hydraulic Conductance
4.4 Calculating Velocities of Water Movement in the Xylem and in Living Cells
4.1 A Brief History of the Study of Water Movement in the Xylem
4.2 The Cohesion-Tension Theory at Work
4.3 How Water Climbs to the Top of a 112-Meter- Tall Tree
4.4 Cavitation and Refilling
ESSENTIAL NUTRIENTS, DEFICIENCIES, AND PLANT DISORDERS
Special Techniques Are Used in Nutritional Studies
Nutrient Solutions Can Sustain Rapid Plant Growth
Mineral Deficiencies Disrupt Plant Metabolism and Function
Analysis of Plant Tissues Reveals Mineral Deficiencies
TREATING NUTRITIONAL DEFICIENCIES
Crop Yields Can Be Improved by Addition of Fertilizers
Some Mineral Nutrients Can Be Absorbed by Leaves
SOIL, ROOTS, AND MICROBES
Negatively Charged Soil Particles Affect the Adsorption of Mineral Nutrients
Soil pH Affects Nutrient Availability, Soil Microbes, and Root Growth
Excess Minerals in the Soil Limit Plant Growth
Plants Develop Extensive Root Systems
Root Systems Differ in Form but Are Based on Common Structures
Different Areas of the Root Absorb Different Mineral Ions
Mycorrhizal Fungi Facilitate Nutrient Uptake by Roots
Nutrients Move from the Mycorrhizal Fungi to the Root Cells
Five point one. Symptoms of Deficiency in Essential Minerals
Five point two. Observing Roots below Ground
Five point one. From Meals to Metals and Back
Five point two. Redox Control of the Root Quiescent Center
PASSIVE AND ACTIVE TRANSPORT
TRANSPORT OF IONS ACROSS A MEMBRANE BARRIER
Diffusion Potentials Develop When Oppositely Charged Ions Move across a Membrane at Different Rates
The Nernst Equation Relates the Membrane Potential to the Distribution of an lon at Equilibrium
The Nernst Equation Can Be Used to Distinguish between Active and Passive Transport
Proton Transport Is a Major Determinant of the Membrane Potential
MEMBRANE TRANSPORT PROCESSES
Channel Transporters Enhance Ion and Water Diffusion across Membranes
Carriers Bind and Transport Specific Substances
Primary Active Transport Is Directly Coupled to Metabolic or Light Energy
Secondary Active Transport Uses the Energy Stored in Electrochemical-Potential Gradients
MEMBRANE TRANSPORT PROTEINS
Kinetic Analyses Can Elucidate Transport Mechanisms
The Genes for Many Transporters Have Been Cloned
Genes for Specific Water Channels Have Been Identified
The Plasma Membrane H+-ATPase Has Several Functional Domains
The Vacuolar H+-ATPase Drives Solute Accumulation into Vacuoles
Plant Vacuoles Are Energized by a Second Proton Pump, the H+-Pyrophosphatase
Calcium Pumps, Antiports, and Channels Regulate Intracellular Calcium
Ions Moving through the Root Cross Both Symplastic and Apoplastic Spaces
Xylem Parenchyma Cells Participate in Xylem Loading
Six point one. Relating the Membrane Potential to the Distribution of Several Ions across the Membrane: The Goldman Equation
Six point two. Patch Clamp Studies in Plant Cells
Six point three. Chemiosmosis in Action
Six point four. Kinetic Analysis of Multiple Transporter Systems
Six point five. Transport Studies with Isolated Vacuoles and Membrane Vesicles
Six point six. ABC Transporters in Plants
PHOTOSYNTHESIS IN HIGHER PLANTS
Light Has Characteristics of Both a Particle and a Wave
When Molecules Absorb or Emit Light, They Change Their Electronic State
Photosynthetic Pigments Absorb the Light That Powers Photosynthesis
KEY EXPERIMENTS IN UNDERSTANDING PHOTOSYNTHESIS
Action Spectra Relate Light Absorption to Photosynthetic Activity
Photosynthesis Takes Place in Complexes Containing Light-Harvesting Antennas and Photochemical Reaction Centers
The Chemical Reaction of Photosynthesis Is Driven by Light
Light Drives the Reduction of NADP and the Formation of ATP
Oxygen-Evolving Organisms Have Two Photosystems That Operate in Series
ORGANIZATION OF THE PHOTOSYNTHETIC APPARATUS
The Chloroplast Is the Site of Photosynthesis
Thylakoids Contain Integral Membrane Proteins
Photosystems I and II Are Spatially Separated in the Thylakoid Membrane
Anoxygenic Photosynthetic Bacteria Have a Reaction Center Similar to That of Photosystem II
ORGANIZATION OF LIGHT-ABSORBING ANTENNA SYSTEMS
The Antenna Funnels Energy to the Reaction Center
Many Antenna Complexes Have a Common Structural Motif
MECHANISMS OF ELECTRON TRANSPORT
Electrons Ejected from Chlorophyll Travel Through a Series of Electron Carriers Organized in the "Z Scheme"
Energy Is Captured When an Excited Chlorophyll Reduces an Electron Acceptor Molecule
The Reaction Center Chlorophylls of the Two Photosystems Absorb at Different Wavelengths
The Photosystem II Reaction Center Is a Multisubunit Pigment-Protein Complex
Water Is Oxidized to Oxygen by Photosystem II
Pheophytin and Two Quinones Accept Electrons from Photosystem II
Electron Flow through the Cytochrome bof Complex Also Transports Protons
Plastoquinone and Plastocyanin Carry Electrons between Photosystems II and I
The Photosystem I Reaction Center Reduces NADP+
Cyclic Electron Flow Generates ATP but no NADPH
PROTON TRANSPORT AND ATP SYNTHESIS IN THE CHLOROPLAST
REPAIR AND REGULATION OF THE PHOTOSYNTHETIC MACHINERY
Carotenoids Serve as Photoprotective Agents
Some Xanthophylls Also Participate in Energy Dissipation
The Photosystem II Reaction Center Is Easily Damaged
Photosystem I Is Protected from Active Oxygen Species
Thylakoid Stacking Permits Energy Partitioning between the Photosystems
GENETICS, ASSEMBLY, AND EVOLUTION OF PHOTOSYNTHETIC SYSTEMS
Chloroplast, Cyanobacterial, and Nuclear Genomes Have Been Sequenced
Chloroplast Genes Exhibit Non-Mendelian Patterns of Inheritance
Many Chloroplast Proteins Are Imported from the Cytoplasm
The Biosynthesis and Breakdown of Chlorophyll Are Complex Pathways
Complex Photosynthetic Organisms Have Evolved from Simpler Forms
7.10 Mode of Action of Some Herbicides
7.11 Chlorophyll Biosynthesis Chlorophyll and heme share early steps of their biosynthetic pathways.
7.1 A novel view of chloroplast structure Stromules extend the reach of the chloroplasts.
Photosynthesis: Carbon Reactions
The Calvin Cycle Has Three Stages: Carboxylation, Reduction, and Regeneration
The Carboxylation of Ribulose Bisphosphate Is Catalyzed by the Enzyme Rubisco
Triose Phosphates Are Formed in the Reduction Step of the Calvin Cycle
Operation of the Calvin Cycle Requires the Regeneration of Ribulose-1,5-Bisphosphate
The Calvin Cycle Regenerates Its Own Biochemical Components
Calvin Cycle Stoichiometry Shows That Only One-Sixth of the Triose Phosphate Is Used for Sucrose or Starch
REGULATION OF THE CALVIN CYCLE
Light-Dependent Enzyme Activation Regulates the Calvin Cycle
Rubisco Activity Increases in the Light
Light-Dependent Ion Movements Regulate Calvin Cycle Enzymes
THE <LATEX>C _ { 2 }</LATEX> OXIDATIVE PHOTOSYNTHETIC CARBON CYCLE
Photosynthetic CO, Fixation and Photorespiratory Oxygenation Are Competing Reactions
Light-Dependent Membrane Transport Regulates the Calvin Cycle
Competition between Carboxylation and Oxygenation Decreases the Efficiency of Photosynthesis
Carboxylation and Oxygenation Are Closely Interlocked in the Intact Leaf
The Biological Function of Photorespiration Is Unknown
CO2-CONCENTRATING MECHANISMS I: ALGAL AND CYANOBACTERIAL PUMPS
Carbon dioxide-concentrating mechanisms two: the C four carbon cycle
Malate and aspartate are carboxylation products of the C four cycle
The C A cycle concentrates carbon dioxide in bundle sheath cells
The concentration of carbon dioxide in bundle sheath cells has an energy cost
Light Regulates the Activity of Key C four Enzymes
In Hot, Dry Climates, the C four Cycle Reduces Photorespiration and Water Loss
Carbon Dioxide-Concentrating Mechanisms Three: Crassulacean Acid Metabolism
The Stomata of CAM Plants Open at Night and Close during the Day
Photosynthesis: Carbon Reactions £
Phosphorylation Regulates the Activity of PEP Carboxylase in C4 and CAM Plants
Some Plants Adjust Their Pattern of CO2 Uptake to Environmental Conditions
SYNTHESIS OF STARCH AND SUCROSE
Starch Is Synthesized in the Chloroplast
Sucrose Is Synthesized in the Cytosol
The Syntheses of Sucrose and Starch Are Competing Reactions
One. Fructose-one, six-bisphosphate aldolase
8.1 How the Calvin Cycle Was Elucidated
8.2 Rubisco: A Model Enzyme for Studying Struc- ture and Function
8.3 Carbon Dioxide: Some Important Physico- chemical Properties
8.6 Operation of the C2 Oxidative Photosynthetic Carbon Cycle
8.7 Three Variations of C4 Metabolism
Chapter References Chapter 9
LIGHT, LEAVES, AND PHOTOSYNTHESIS
CONCEPTS AND UNITS IN THE MEASUREMENT OF LIGHT
Leaf Anatomy Maximizes Light Absorption
Chloroplast Movement and Leaf Movement Can Control Light Absorption
Plants Adapt to Sun and Shade
Plants Compete for Sunlight
PHOTOSYNTHETIC RESPONSES TO LIGHT BY THE INTACT LEAF
Light-Response Curves Reveal Photosynthetic Properties
Leaves Must Dissipate Excess Light Energy
Leaves Must Dissipate Vast Quantities of Heat
Isoprene Synthesis Helps Leaves Cope with Heat
Absorption of Too Much Light Can Lead to Photoinhibition
PHOTOSYNTHETIC RESPONSES TO CARBON DIOXIDE
Atmospheric CO2 Concentration Keeps Rising
Diffusion of CO2 to the Chloroplast Is Essential to Photosynthesis
Patterns of Light Absorption Generate Gradients of CO2 Fixation within the Leaf
CO2 Imposes Limitations on Photosynthesis
Carbon dioxide-Concentrating Mechanisms Affect Photosynthetic Responses of Leaves
Discrimination of Carbon Isotopes Reveals Different Photosynthetic Pathways
PHOTOSYNTHETIC RESPONSES TO TEMPERATURE
Nine point one. Working with Light
Nine point four. Calculating Important Parameters in Leaf Gas Exchange
Nine point five. Isotope Discrimination
Translocation in the Phloem
PATHWAYS OF TRANSLOCATION
Sugar Is Translocated in Phloem Sieve Elements
Mature Sieve Elements Are Living Cells Highly Specialized for Translocation
Sieve Areas Are the Prominent Feature of Sieve Elements
TABLE 10.1 Characteristics of the two types of sieve elements in seed plants Sieve tube elements found in angiosperms
Sieve cells found in gymnosperms
Deposition of P-Protein and Callose Seals Off Damaged Sieve Elements
Companion Cells Aid the Highly Specialized Sieve Elements
PATTERNS OF TRANSLOCATION: SOURCE TO SINK
Source-to-Sink Pathways Follow Anatomic and Developmental Patterns
MATERIALS TRANSLOCATED IN THE PHLOEM: SUCROSE, AMINO ACIDS, HORMONES, AND SOME INORGANIC IONS
Phloem Sap Can Be Collected and Analyzed
Sugars Are Translocated in Nonreducing Form
Phloem and Xylem Interact to Transport Nitrogenous Compounds
Velocities of Phloem Transport Far Exceed the Rate of Diffusion
THE MECHANISM OF TRANSLOCATION IN THE PHLOEM: THE PRESSURE-FLOW MODEL
A Pressure Gradient Drives Translocation
The Predictions of the Pressure-Flow Model Have Been Confirmed
Sieve Plate Pores Are Open Channels
Bidirectional Transport Cannot Be Seen in Single Sieve Elements
Translocation Rate Is Typically Insensitive to the Energy Supply of the Path Tissues
Pressure Gradients Are Sufficient to Drive a Mass Flow of Solution
The Mechanism of Phloem Transport in Gymnosperms May Be Different
PHLOEM LOADING: FROM CHLOROPLASTS TO SIEVE ELEMENTS
Photosynthate Can Move from Mesophyll Cells to the Sieve Elements via the Apoplast or the Symplast
Sucrose Uptake in the Apoplastic Pathway Requires Metabolic Energy
In the Apoplastic Pathway, Sieve Element Loading Involves a Sucrose-H+ Symporter
Phloem Loading Appears to Be Symplastic in Plants with Intermediary Cells
The Polymer-Trapping Model Explains Symplastic Loading in Source Leaves
The Type of Phloem Loading Is Correlated with Plant Family and with Climate
PHLOEM UNLOADING AND SINK-TO-SOURCE TRANSITION
Phloem Unloading Can Occur via Symplastic or Apoplastic Pathways
Transport into Sink Tissues Requires Metabolic Energy
The Transition of a Leaf from Sink to Source Is Gradual
PHOTOSYNTHATE ALLOCATION AND PARTITIONING
Allocation Includes the Storage, Utilization, and Transport of Fixed Carbon
Transport Sugars Are Partitioned among the Various Sink Tissues
Allocation in Source Leaves Is Regulated
Sink Tissues Compete for Available Translocated Photosynthate
Sink Strength Is a Function of Sink Size and Sink Activity
Changes in the Source-to-Sink Ratio Cause Long- Term Alterations in the Source
Long-Distance Signals May Coordinate the Activities of Sources and Sinks
Long-Distance Signals May Also Regulate Plant Growth and Development
Ten point one. Classical Studies on Phloem Transport Classical experiments illustrate some basic properties of phloem transport.
Ten point five. Evidence for Apoplastic Loading of Sieve Elements
Respiration and Lipid Metabolism
OVERVIEW OF PLANT RESPIRATION
GLYCOLYSIS: A CYTOSOLIC AND PLASTIDIC PROCESS
Glycolysis Converts Carbohydrates into Pyruvate, Producing NADH and ATP
Plants Have Alternative Glycolytic Reactions
In the absence of oxygen, fermentation regenerates the NAD+ needed for glycolysis.
Fermentation does not liberate all the energy available in each sugar molecule.
Plant glycolysis is controlled by its products.
The Pentose Phosphate Pathway Produces NADPH and Biosynthetic Intermediates
THE CITRIC ACID CYCLE: A MITOCHONDRIAL MATRIX PROCESS
Mitochondria Are Semiautonomous Organelles
Pyruvate Enters the Mitochondrion and Is Oxidized via the Citric Acid Cycle
The Citric Acid Cycle of Plants Has Unique Features
ELECTRON TRANSPORT AND ATP SYNTHESIS AT THE INNER MITOCHONDRIAL MEMBRANE
The Electron Transport Chain Catalyzes a Flow of Electrons from NADH to Oxygen
Some Electron Transport Enzymes Are Unique to Plant Mitochondria
ATP Synthesis in the Mitochondrion Is Coupled to Electron Transport
Transporters Exchange Substrates and Products
Aerobic Respiration Yields about 60 Molecules of ATP per Molecule of Sucrose
Several Subunits of Respiratory Complexes Are Encoded by the Mitochondrial Genome
Plants Have Several Mechanisms That Lower the ATP Yield
Mitochondrial Respiration Is Controlled by Key Metabolites
Respiration Is Tightly Coupled to Other Pathways
RESPIRATION IN INTACT PLANTS AND TISSUES
Plants Respire Roughly Half of the Daily Photosynthetic Yield
Respiration Operates during Photosynthesis
Different Tissues and Organs Respire at Different Rates
Mitochondrial Function Is Crucial during Pollen Development
Environmental Factors Alter Respiration Rates
Fats and Oils Store Large Amounts of Energy
Triacylglycerols Are Stored in Oleosomes
Polar Glycerolipids Are the Main Structural Lipids in Membranes
Fatty Acid Biosynthesis Consists of Cycles of Two-Carbon Addition
Glycerolipids Are Synthesized in the Plastids and the Endoplasmic Reticulum
Lipid Composition Influences Membrane Function
Membrane Lipids Are Precursors of Important Signaling Compounds
Storage Lipids Are Converted into Carbohydrates in Germinating Seeds
11.1 Isolation of Mitochondria
11.2 The Electron Transport Chain of Plant Mitochondria Contains Multiple NAD(P)H Dehydrogenases
11.3 The Alternative Oxidase
11.4 F.F1-ATP Synthases: The World's Smallest Rotary Motors
11.5 Transport In and Out of Plant Mitochondria Plant mitochondria operate different transport mechanisms.
The mitochondrial genome encodes about 40 mitochondrial proteins.
11.2 Metabolic Profiling of Plant Cells
11.3 Temperature Regulation by Thermogenic Flowers
11.4 Reactive Oxygen Species (ROS) and Plant Mitochondria
11.5 The Role of Respiration in Desiccation Tolerance
11.6 Balancing Life and Death; The Role of Mito- chondria in Programmed Cell Death
Assimilation of Mineral Nutrients
NITROGEN IN THE ENVIRONMENT
Nitrogen Passes through Several Forms in a Biogeochemical Cycle
Stored Ammonium or Nitrate Can Be Toxic
Nitrate, Light, and Carbohydrates Regulate Nitrate Reductase
Nitrite Reductase Converts Nitrite to Ammonium
Plants Can Assimilate Nitrate in Both Roots and Shoots
Conversion of Ammonium to Amino Acids Requires Two Enzymes
Ammonium Can Be Assimilated via an Alternative Pathway
Transamination Reactions Transfer Nitrogen
Asparagine and Glutamine Link Carbon and Nitrogen Metabolism
BIOLOGICAL NITROGEN FIXATION
Free-Living and Symbiotic Bacteria Fix Nitrogen
Nitrogen Fixation Requires Anaerobic Conditions
Symbiotic Nitrogen Fixation Occurs in Specialized Structures
Establishing Symbiosis Requires an Exchange of Signals
Nod Factors Produced by Bacteria Act as Signals for Symbiosis
Nodule Formation Involves Several Phytohormones
The Nitrogenase Enzyme Complex Fixes N2
Nitrogenase enzyme complex
Amides and Ureides Are the Transported Forms of Nitrogen
Sulfate Is the Absorbed Form of Sulfur in Plants
Sulfate Assimilation Requires the Reduction of Sulfate to Cysteine
Sulfate Assimilation Occurs Mostly in Leaves
Methionine Is Synthesized from Cysteine
Cations Form Noncovalent Bonds with Carbon Compounds
Roots Modify the Rhizosphere to Acquire Iron
Iron Forms Complexes with Carbon and Phosphate
THE ENERGETICS OF NUTRIENT ASSIMILATION
12.1 Development of a root module
12.2 Measurement of Nitrogen Fixation Acetylene reduction is used as an indirect measurement of nitrogen reduction.
CUTIN, WAXES, AND SUBERIN
Cutin, Waxes, and Suberin Are Made Up of Hydrophobic Compounds
Cutin, Waxes, and Suberin Help Reduce Transpiration and Pathogen Invasion
Secondary Metabolites Defend Plants against Herbivores and Pathogens
Plant Defenses Are a Product of Evolution
SECONDARY CARBON METABOLISM
Secondary Metabolites Are Divided into Three Major Groups
Terpenes Are Formed by the Fusion of Five- Carbon Isoprene Units
There Are Two Pathways for Terpene Biosynthesis
Isopentenyl Diphosphate and Its Isomer Combine to Form Larger Terpenes
Some Terpenes Have Roles in Growth and Development
Terpenes Defend against Herbivores in Many Plants
Phenylalanine Is an Intermediate in the Biosynthesis of Most Plant Phenolics
Some Simple Phenolics Are Activated by Ultraviolet Light
The Release of Phenolics into the Soil May Limit the Growth of Other Plants
Lignin Is a Highly Complex Phenolic Macromolecule
There Are Four Major Groups of Flavonoids
Anthocyanins Are Colored Flavonoids That Attract Animals
Flavonoids May Protect against Damage by Ultraviolet Light
Isoflavonoids Have Antimicrobial Activity
Tannins Deter Feeding by Herbivores
NITROGEN-CONTAINING COMPOUNDS
Alkaloids Have Dramatic Physiological Effects on Animals
Cyanogenic Glycosides Release the Poison Hydrogen Cyanide
Glucosinolates Release Volatile Toxins
Nonprotein Amino Acids Defend against Herbivores
Some Plant Proteins Inhibit Herbivore Digestion
Herbivore Damage Triggers a Complex Signaling Pathway
Jasmonic Acid Is a Plant Stress Hormone That Activates Many Defense Responses
PLANT DEFENSE AGAINST PATHOGENS
Some Antimicrobial Compounds Are Synthesized before Pathogen Attack
Infection Induces Additional Antipathogen Defenses
Some Plants Recognize Specific Substances Released from Pathogens
Exposure to Elicitors Induces a Signal Transduction Cascade
A Single Encounter with a Pathogen May Increase Resistance to Future Attacks
Thirteen point one. Structure of Various Triterpenes
Thirteen point two. The Shikimic Acid Pathway
Thirteen point three. Detailed Chemical Structure of a Portion of a Lignin Molecule
Thirteen point two. Alkaloid-Making Fungal Symbionts
Genome Size, Organization, and Complexity
Most Plant Haploid Genomes Contain twenty thousand to thirty thousand genes
Prokaryotic Gene Expression
DNA-Binding Proteins Regulate Transcription in Prokaryotes
Eukaryotic Gene Expression
Eukaryotic Nuclear Transcripts Require Extensive Processing
Various Posttranscriptional Regulatory Mechanisms Have Been Identified
Transcription in Eukaryotes Is Modulated by cis-Acting Regulatory Sequences
Transcription Factors Contain Specific Structural Motifs
Homeodomain Proteins Are a Special Class of Helix-Turn-Helix Proteins
Eukaryotic Genes Can Be Coordinately Regulated
The Ubiquitin Pathway Regulates Protein Turnover
Signal Transduction in Prokaryotes
Bacteria Employ Two-Component Regulatory Systems to Sense Extracellular Signals
Osmolarity Is Detected by a Two-Component System
Related Two-Component Systems Have Been Identified in Eukaryotes
Signal Transduction in Eukaryotes
Two Classes of Signals Define Two Classes of Receptors
Most Steroid Receptors Act as Transcription Factors
Cell Surface Receptors Can Interact with G Proteins
Heterotrimeric G Proteins Cycle between Active and Inactive Forms
Activation of Adenylyl Cyclase Increases the Level of Cyclic AMP
Activation of Phospholipase C Initiates the IP3 Pathway
IP3 Opens Calcium Channels on the ER and on the Tonoplast
Cyclic ADP-Ribose Mediates Intracellular Ca2+ Release Independently of IP3 Signaling
Some Protein Kinases Are Activated by Calcium-Calmodulin Complexes
Diacylglycerol Activates Protein Kinase C
Phospholipase A2 Generates Other Membrane- Derived Signaling Agents
In Vertebrate Vision, a Heterotrimeric G Protein Activates Cyclic GMP Phosphodiesterase
Nitric Oxide Gas Stimulates the Synthesis of cGMP
Cell Surface Receptors May Have Catalytic Activity
Ligand Binding to Receptor Tyrosine Kinases Induces Autophosphorylation
Intracellular Signaling Proteins That Bind to RTKs Are Activated by Phosphorylation
Ras Recruits Raf to the Plasma Membrane
The Activated MAP Kinase Enters the Nucleus
Plant Receptorlike Kinases Are Structurally Similar to Animal Receptor Tyrosine Kinases
THE STRUCTURE AND SYNTHESIS OF PLANT CELL WALLS
Plant Cell Walls Have Varied Architecture
The Primary Cell Wall Is Composed of Cellulose Microfibrils Embedded in a Polysaccharide Matrix
Cellulose Microfibrils Are Synthesized at the Plasma Membrane
Matrix Polymers Are Synthesized in the Golgi and Secreted in Vesicles
Hemicelluloses Are Matrix Polysaccharides That Bind to Cellulose
Pectins Are Gel-Forming Components of the Matrix
Structural Proteins Become Cross-Linked in the Wall
New Primary Walls Are Assembled during Cytokinesis
Secondary Walls Form in Some Cells after Expansion Ceases
PATTERNS OF CELL EXPANSION
Microfibril Orientation Determines Growth Directionality of Cells with Diffuse Growth
Cortical Microtubules Determine the Orientation of Newly Deposited Microfibrils
THE RATE OF CELL ELONGATION
Stress Relaxation of the Cell Wall Drives Water Uptake and Cell Elongation
The Rate of Cell Expansion Is Governed By Two Growth Equations
Acid-Induced Growth Is Mediated by Expansins
Glucanases and Other Hydrolytic Enzymes May Modify the Matrix
Many Structural Changes Accompany the Cessation of Wall Expansion
WALL DEGRADATION AND PLANT DEFENSE
Enzymes Mediate Wall Hydrolysis and Degradation
Oxidative Bursts Accompany Pathogen Attack
Wall Fragments Can Act as Signaling Molecules
15.1 Terminology for Polysaccharide Chemistry
15.2 Molecular Model for the Synthesis of Cellulose and Other Wall Polysaccharides That Consist of a Disaccharide Repeat
15.3 Matrix Components of the Cell Wall
15.4 The Mechanical Properties of Cell Walls: Studies with Nitella
15.5 Structure of Biologically Active Oligosac- charins
Embryogenesis Establishes the Essential Features of the Mature Plant
Arabidopsis Embryos Pass through Four Distinct Stages of Development
The Axial Pattern of the Embryo Is Established during the First Cell Division of the Zygote
The Radial Pattern of Tissue Differentiation Is First Visible at the Globular Stage
Embryogenesis Requires Specific Gene Expression
Embryo Maturation Requires Specific Gene Expression
THE ROLE OF CYTOKINESIS IN PATTERN FORMATION
The Stereotypic Cell Division Pattern Is Not Required for the Axial and Radial Patterns of Tissue Differentiation
An Arabidopsis Mutant with Defective Cytokinesis Cannot Establish the Radial Tissue Pattern
MERISTEMS IN PLANT DEVELOPMENT
The Shoot Apical Meristem Is a Highly Dynamic Structure
The Shoot Apical Meristem Contains Different Functional Zones and Layers
Some Meristems Arise during Postembryonic Development
Axillary, Floral, and Inflorescence Shoot Meristems Are Variants of the Vegetative Meristem
The Arrangement of Leaf Primordia Is Genetically Programmed
The Root Tip Has Four Developmental Zones
Root Stem Cells Generate Longitudinal Files of Cells
Root Apical Meristems Contain Several Types of Stem Cells
A Secondary Cell Wall Forms during Tracheary Element Differentiation
INITIATION AND REGULATION OF DEVELOPMENTAL PATHWAYS
Transcription Factor Genes Control Development
Many Plant Signaling Pathways Utilize Protein Kinases
A Cell's Fate Is Determined by Its Position
Developmental Pathways Are Controlled by Networks of Interacting Genes
Development Is Regulated by Cell-to-Cell Signaling
THE ANALYSIS OF PLANT GROWTH
Plant Growth Can Be Measured in Different Ways
The Production of Cells by the Meristem Is Comparable to a Fountain
Tissue Elements Are Displaced during Expansion
As Regions Move Away from the Apex, Their Growth Rate Increases
The Growth Velocity Profile Is a Spatial Description of Growth
SENESCENCE AND PROGRAMMED CELL DEATH
Plants Exhibit Various Types of Senescence
Senescence Is an Ordered Series of Cytological and Biochemical Events
Programmed Cell Death Is a Specialized Type of Senescence
16.1 Polarity of Fucus Zygotes
16.2 The Preprophase Band of Microtubules
16.3 Azolla Root Development
16.4 The Relative Elemental Growth Rate
16.1 Plant Meristems: An Historical Overview
16.2 The Mermaids Wineglass
16.3 Division Plane Determination in Plant Cells
THE PHOTOCHEMICAL AND BIOCHEMICAL PROPERTIES OF PHYTOCHROME
One. Photoreversibility and its relationship to phytochrome responses
Three. The phytochrome gene family, the members of which have different functions in photomorphogenesis
Pfr Is the Physiologically Active Form of Phytochrome
Phytochrome Is a Dimer Composed of Two Polypeptides
Phytochromobilin Is Synthesized in Plastids
Both Chromophore and Protein Undergo Conformational Changes
Two Types of Phytochromes Have Been Identified
Phytochrome Is Encoded by a Multigene Family
PHY Genes Encode Two Types of Phytochrome
LOCALIZATION OF PHYTOCHROME IN TISSUES AND CELLS
Phytochrome Can Be Detected in Tissues Spectrophotometrically
Phytochrome Is Differentially Expressed In Different Tissues
CHARACTERISTICS OF PHYTOCHROME- INDUCED WHOLE-PLANT RESPONSES
Phytochrome Responses Vary in Lag Time and Escape Time
Phytochrome Responses Can Be Distinguished by the Amount of Light Required
Very-Low-Fluence Responses Are Nonphotoreversible
Low-Fluence Responses Are Photoreversible
High-Irradiance Responses Are Proportional to the Irradiance and the Duration
The HIR Action Spectrum of Etiolated Seedlings Has Peaks in the Far-Red, Blue, and UV-A Regions
The HIR Action Spectrum of Green Plants Has a Major Red Peak
ECOLOGICAL FUNCTIONS: SHADE AVOIDANCE
Phytochrome Enables Plants to Adapt to Changing Light Conditions
ECOLOGICAL FUNCTIONS: CIRCADIAN RHYTHMS
Phytochrome Regulates the Sleep Movements of Leaves
Circadian Clock Genes of Arabidopsis Have Been Identified
ECOLOGICAL FUNCTIONS: PHYTOCHROME SPECIALIZATION
Phytochrome B Mediates Responses to Continuous Red or White Light
Phytochrome A Is Required for the Response to Continuous Far-Red Light
Developmental Roles for Phytochromes C, D, and E Are Also Emerging
Phytochrome Interactions Are Important Early in Germination
PHYTOCHROME FUNCTIONAL DOMAINS
CELLULAR AND MOLECULAR MECHANISMS
Phytochrome Regulates Membrane Potentials and Ion Fluxes
Phytochrome Regulates Gene Expression
Both Phytochrome and the Circadian Rhythm Regulate LHCB
The Circadian Oscillator Involves a Transcriptional Negative Feedback Loop
Regulatory Sequences Control Light-Regulated Transcription
Phytochrome Moves to the Nucleus
Phytochrome Acts through Multiple Signal Transduction Pathways
Phytochrome Action Can Be Modulated by the Action of Other Photoreceptors
Seventeen point one. The Structure of Phytochromes
Seventeen point ten. The Roles of G-Proteins and Calcium in Phytochrome Responses
Seventeen point eleven. The Origins of Phytochrome as a Bacterial Two-Component Receptor
Seventeen point two. Know thy neighbor through phytochrome
THE PHOTOPHYSIOLOGY OF BLUE-LIGHT RESPONSES
Blue Light Stimulates Asymmetric Growth and Bending
How Do Plants Sense the Direction of the Light Signal?
Blue Light Rapidly Inhibits Stem Elongation
Blue Light Regulates Gene Expression
Blue Light Stimulates Stomatal Opening
Blue Light Activates a Proton Pump at the Guard Cell Plasma Membrane
Blue-Light Responses Have Characteristic Kinetics and Lag Times
Blue Light Regulates Osmotic Relations of Guard Cells
Sucrose Is an Osmotically Active Solute in Guard Cells
BLUE-LIGHT PHOTORECEPTORS
Cryptochromes Are Involved in the Inhibition of Stem Elongation
Phototropins Are Involved in Phototropism and Chloroplast Movements
The Carotenoid Zeaxanthin Mediates Blue-Light Photoreception in Guard Cells
Cryptochromes Accumulate in the Nucleus
Zeaxanthin Isomerization Might Start a Cascade Mediating Blue Light-Stimulated Stomatal Opening
The Xanthophyll Cycle Confers Plasticity to the Stomatal Responses to Light
Eighteen point four. The Coleoptile Chloroplast
Eighteen point one. Guard Cell Photosynthesis
Eighteen point two. Phototropins
Eighteen point three. The Sensory Transduction of the Inhibition of Stem Elongation by Blue Light
Eighteen point four. The Blue/Green Reversibility of the Blue-Light Response of Stomata
Eighteen point five. Zeaxanthin and Carbon Dioxide Sensing in Guard Cells
THE EMERGENCE OF THE AUXIN CONCEPT
BIOSYNTHESIS AND METABOLISM OF AUXIN
The Principal Auxin in Higher Plants Is Indole-3-Acetic Acid
Auxins in Biological Samples Can Be Quantified
IAA is synthesized in meristems, young leaves, and developing fruits and seeds.
Multiple pathways exist for the biosynthesis of IAA.
IAA Is Also Synthesized from Indole or from Indole-3-Glycerol Phosphate
Most IAA in the Plant Is in a Covalently Bound Form
IAA Is Degraded by Multiple Pathways
Two Subcellular Pools of IAA Exist: The Cytosol and the Chloroplasts
Polar Transport Requires Energy and Is Gravity Independent
A Chemiosmotic Model Has Been Proposed to Explain Polar Transport
Inhibitors of Auxin Transport Block Auxin Efflux
PIN Proteins Are Rapidly Cycled to and from the Plasma Membrane
Naturally occurring auxin transport inhibitors
Flavonoids Serve as Endogenous ATIs
Auxin Is Also Transported Nonpolarly in the Phloem
PHYSIOLOGICAL EFFECTS OF AUXIN: CELL ELONGATION
Auxins Promote Growth in Stems and Coleoptiles, While Inhibiting Growth in Roots
The Outer Tissues of Dicot Stems Are the Targets of Auxin Action
The Minimum Lag Time for Auxin-Induced Growth Is Ten Minutes
Auxin Rapidly Increases the Extensibility of the Cell Wall
Auxin-Induced Proton Extrusion Acidifies the Cell Wall and Increases Cell Extension
Auxin-Induced Proton Extrusion May Involve Both Activation and Synthesis
PHYSIOLOGICAL EFFECTS OF AUXIN: PHOTOTROPISM AND GRAVITROPISM
Phototropism Is Mediated by the Lateral Redistribution of Auxin
Gravitropism Also Involves Lateral Redistribution of Auxin
Statoliths Serve as Gravity Sensors in Shoots and Roots
Auxin Is Redistribution Laterally in the Root Cap
PIN3 Is Relocated Laterally to the Lower Side of Root Columella Cells
Gravity Sensing May Involve Calcium and pH as Second Messengers
DEVELOPMENTAL EFFECTS OF AUXIN
Auxin Regulates Apical Dominance
Auxin Promotes the Formation of Lateral and Adventitious Roots
Auxin Delays the Onset of Leaf Abscission
Auxin Transport Regulates Floral Bud Development
Auxin Promotes Fruit Development
Auxin Induces Vascular Differentiation
Synthetic Auxins Have a Variety of Commercial Uses
AUXIN SIGNAL TRANSDUCTION PATHWAYS
ABP1 Functions as an Auxin Receptor
Calcium and Intracellular pH Are Possible Signaling Intermediates
Auxin-Induced Genes Fall into Two Classes: Early and Late
Auxin-Responsive Domains Are Composite Structures
Early Auxin Genes Are Regulated by Auxin Response Factors
19.1 Additional Synthetic Auxins
19.2 The Structural Requirements for Auxin Activity
19.3 Auxin Measurement by Radioimmunoassy
19.4 Evidence for the Tryptophan-Independent Biosynthesis of IAA
19.5 The Multiple Factors That Regulate Steady- State IAA Levels
19.6 The Mechanism of Fusicoccin Activation of the Plasma Membrane H+-ATPase
19.7 The Fluence Response of Phototropism
19.2 Exploring the Cellular Basis of Polar Auxin Transport.
19.3 Phototropism: From Photoperception to Auxin-Dependent Changes in Gene Ex- pression
20 Gibberellins: Regulators of Plant Height
THE DISCOVERY OF THE GIBBERELLINS
EFFECTS OF GIBBERELLIN ON GROWTH AND DEVELOPMENT
Gibberellins Stimulate Stem Growth in Dwarf and Rosette Plants
Gibberellins Regulate the Transition from Juvenile to Adult Phases
Gibberellins Influence Floral Initiation and Sex Determination
Gibberellins Promote Fruit Set
Gibberellins Promote Seed Germination
Gibberellins Have Commercial Applications
BIOSYNTHESIS AND METABOLISM OF GIBBERELLIN
Gibberellins Are Measured via Highly Sensitive Physical Techniques
Gibberellins Are Synthesized via the Terpenoid Pathway in Three Stages
The Enzymes and Genes of the Gibberellin Biosynthetic Pathway Have Been Characterized
Gibberellins May Be Covalently Linked to Sugars
GA one Is the Biologically Active Gibberellin Controlling Stem Growth
Endogenous GA, Levels Are Correlated with Tallness
Gibberellins Are Biosynthesized in Apical Tissues
Gibberellin Regulates Its Own Metabolism
Environmental Conditions Can Alter the Transcription of Gibberellin Biosynthesis Genes
Auxin Promotes Gibberellin Biosynthesis
Dwarfness Can Now Be Genetically Engineered
PHYSIOLOGICAL MECHANISMS OF GIBBERELLIN-INDUCED GROWTH
Gibberellins Stimulate Cell Elongation and Cell Division
Gibberellins Enhance Cell Wall Extensibility without Acidification
Gibberellins Regulate the Transcription of Cell Cycle Kinases in Intercalary Meristems
Gibberellin Response Mutants Have Defects in Signal Transduction
Different Genetic Screens Have Identified the Related Repressors GAI and RGA
Gibberellins Cause the Degradation of RGA Transcriptional Repressors
Gibberellins: Regulators of Plant Height
DELLA Repressors Have Been Identified in Crop Plants
The Negative Regulator SPINDLY Is an Enzyme That Alters Protein Activity
SPY Acts Upstream of GAI and RGA in the Gibberellin Signal Transduction Chain
GIBBERELLIN SIGNAL TRANSDUCTION: CEREAL ALEURONE LAYERS
Gibberellin from the Embryo Induces Alpha-Amylase Production by Aleurone Layers
Gibberellic Acid Enhances the Transcription of a- Amylase mRNA
A GA-MYB Transcription Factor Regulates a- Amylase Gene Expression
Gibberellin Receptors May Interact with G- Proteins on the Plasma Membrane
Cyclic GMP, Ca2+, and Protein Kinases Are Possible Signaling Intermediates
The Gibberellin Signal Transduction Pathway Is Similar for Stem Growth and a-Amylase Production
20.2 Gibberellin Detection
20.6 Promoter Elements and Gibberellin Responsiveness
Cytokinins: Regulators of Cell Division
CELL DIVISION AND PLANT DEVELOPMENT
Differentiated Plant Cells Can Resume Division
Diffusible Factors May Control Cell Division
Plant Tissues and Organs Can Be Cultured
THE DISCOVERY, IDENTIFICATION, AND PROPERTIES OF CYTOKININS
Kinetin Was Discovered as a Breakdown Product of DNA
Zeatin Is the Most Abundant Natural Cytokinin
Some Synthetic Compounds Can Mimic or Antagonize Cytokinin Action
Cytokinins Occur in Both Free and Bound Forms
The Hormonally Active Cytokinin Is the Free Base
Some Plant Pathogenic Bacteria, Insects, and Nematodes Secrete Free Cytokinins
BIOSYNTHESIS, METABOLISM, AND TRANSPORT OF CYTOKININS
Crown Gall Cells Have Acquired a Gene for Cytokinin Synthesis
IPT Catalyzes the First Step in Cytokinin Biosynthesis
Cytokinins from the Root Are Transported to the Shoot via the Xylem
A Signal from the Shoot Regulates the Transport of Zeatin Ribosides from the Root
Cytokinins Are Rapidly Metabolized by Plant Tissues
THE BIOLOGICAL ROLES OF CYTOKININS
Cytokinins Regulate Cell Division in Shoots and Roots
Cytokinins Regulate Specific Components of the Cell Cycle
The Auxin: Cytokinin Ratio Regulates Morphogenesis in Cultured Tissues
Cytokinins Modify Apical Dominance and Promote Lateral Bud Growth
Cytokinins Induce Bud Formation in a Moss
Cytokinin Overproduction Has Been Implicated in Genetic Tumors
Cytokinins Delay Leaf Senescence
Cytokinins Promote Movement of Nutrients
Cytokinins Promote Chloroplast Development
Cytokinins Promote Cell Expansion in Leaves and Cotyledons
Cytokinins Regulate Growth of Stems and Roots
Cytokinin-Regulated Processes Are Revealed in Plants That Overproduce Cytokinin
CELLULAR AND MOLECULAR MODES OF CYTOKININ ACTION
A Cytokinin Receptor Related to Bacterial Two-Component Receptors Has Been Identified
Cytokinins Cause a Rapid Increase in the Expression of Response Regulator Genes
Histidine Phosphotransferases May Mediate the Cytokinin Signaling Cascade
Cytokinin-Induced Phosphorylation Activates Transcription Factors
21.1 Cultured Cells Can Acquire the Ability to Synthesize Cytokinins
21.2 Structures of Some Naturally Occurring Cytokinins
21.3 Various Methods Are Used to Detect and Identify Cytokinins
21.4 Cytokinins Are Also Present in Some tRNAs in Animal and Plant Cells
21.7 Cytokinin Can Promote Light-Mediated Development
STRUCTURE, BIOSYNTHESIS, AND MEASUREMENT OF ETHYLENE
The Properties of Ethylene Are Deceptively Simple
Bacteria, Fungi, and Plant Organs Produce Ethylene
Regulated Biosynthesis Determines the Physiological Activity of Ethylene
Environmental Stresses and Auxins Promote Ethylene Biosynthesis
Ethylene Production and Action Can Be Inhibited
Ethylene Can Be Measured by Gas Chromatography
DEVELOPMENTAL AND PHYSIOLOGICAL EFFECTS OF ETHYLENE
Ethylene Promotes the Ripening of Some Fruits
Leaf Epinasty Results When ACC from the Root Is Transported to the Shoot
Ethylene Induces Lateral Cell Expansion
The Hooks of Dark-Grown Seedlings Are Maintained by Ethylene Production
Ethylene Breaks Seed and Bud Dormancy in Some Species
Ethylene Promotes the Elongation Growth of Submerged Aquatic Species
Ethylene Induces the Formation of Roots and Root Hairs
Ethylene Induces Flowering in the Pineapple Family
Ethylene Enhances the Rate of Leaf Senescence
The Role of Ethylene in Defense Responses Is Complex
Ethylene Biosynthesis in the Abscission Zone Is Regulated by Auxin
Ethylene Has Important Commercial Uses
CELLULAR AND MOLECULAR MODES OF ETHYLENE ACTION
Ethylene Receptors Are Related to Bacterial Two-Component System Histidine Kinases
High-Affinity Binding of Ethylene to Its Receptor Requires a Copper Cofactor
Unbound Ethylene Receptors Are Negative Regulators of the Response Pathway
A Serine/Threonine Protein Kinase Is Also Involved in Ethylene Signaling
EIN two Encodes a Transmembrane Protein
Ethylene Regulates Gene Expression
Genetic Epistasis Reveals the Order of the Ethylene Signaling Components
22.1 Cloning of ACC Synthase
22.2 Cloning of the ACC Oxidase Gene
22.3 ACC Synthase Gene Expression and Biotechnology
22.4 Abscission and the Dawn of Agriculture
22.5 Ethylene Binding to ETR1 and Seedling Response to Ethylene
22.6 Conservation of Ethylene Signaling Components in Other Plant Species
Abscisic Acid: A Seed Maturation and Antistress Signal
OCCURRENCE, CHEMICAL STRUCTURE, AND MEASUREMENT OF ABA
The Chemical Structure of ABA Determines Its Physiological Activity
ABA Is Assayed by Biological, Physical, and Chemical Methods
BIOSYNTHESIS, METABOLISM, AND TRANSPORT OF ABA
ABA Is Synthesized from a Carotenoid Intermediate
ABA Concentrations in Tissues Are Highly Variable
ABA Can Be Inactivated by Oxidation or Conjugation
ABA Is Translocated in Vascular Tissue
DEVELOPMENTAL AND PHYSIOLOGICAL EFFECTS OF ABA
ABA Levels in Seeds Peak during Embryogenesis
ABA Promotes Desiccation Tolerance in the Embryo
ABA Promotes the Accumulation of Seed Storage Protein during Embryogenesis
Seed Dormancy May Be Imposed by the Coat or the Embryo
Environmental Factors Control the Release from Seed Dormancy
Seed Dormancy Is Controlled by the Ratio of ABA to GA
ABA Inhibits Precocious Germination and Vivipary
ABA Accumulates in Dormant Buds
ABA Inhibits GA-Induced Enzyme Production
ABA Closes Stomata in Response to Water Stress
ABA Promotes Root Growth and Inhibits Shoot Growth at Low Water Potentials
ABA Promotes Leaf Senescence Independently of Ethylene
CELLULAR AND MOLECULAR MODES OF ABA ACTION
ABA Is Perceived Both Extracellularly and Intracellularly
ABA Increases Cytosolic Calcium, Raises Cytosolic pH, and Depolarizes the Membrane
ABA Activation of Slow Anion Channels Causes Long-Term Membrane Depolarization
Protein Kinases and Phosphatases Participate in ABA Action
ABA Stimulates Phospholipid Metabolism
ABI Protein Phosphatases Are Negative Regulators of the ABA Response
ABA Signaling Also Involves Calcium-Independent Pathways
ABA Regulation of Gene Expression Is Mediated by Transcription Factors
Other Negative Regulators of the ABA Response Have Been Identified
Twenty-three point one. The Structure of Lunularic Acid from Liverworts
Twenty-three point two. Structural Requirements for Biological Activity of Abscisic Acid
Twenty-three point three. The Bioassay of ABA
Twenty-three point eight. ABA-Induced Senescence and Ethylene
Twenty-three point nine. Yellow Cameleon: A Noninvasive Tool for Measuring Intracellular Calcium
Twenty-three point ten. Promoter Elements That Regulate ABA Induction of Gene Expression
Twenty-three point eleven. The Two-Hybrid System
Floral Meristems and Floral Organ Development
The Characteristics of Shoot Meristems in Arabidopsis Change with Development
The Four Different Types of Floral Organs Are Initiated as Separate Whorls
Three Types of Genes Regulate Floral Development
Meristem Identity Genes Regulate Meristem Function
Homeotic Mutations Led to the Identification of Floral Organ Identity Genes
Three Types of Homeotic Genes Control Floral Organ Identity
The ABC Model Explains the Determination of Floral Organ Identity
FLORAL EVOCATION: INTERNAL AND EXTERNAL CUES
THE SHOOT APEX AND PHASE CHANGES
Shoot Apical Meristems Have Three Developmental Phases
Juvenile Tissues Are Produced First and Are Located at the Base of the Shoot
Phase Changes Can Be Influenced by Nutrients, Gibberellins, and Other Chemical Signals
Competence and Determination Are Two Stages in Floral Evocation
CIRCADIAN RHYTHMS: THE CLOCK WITHIN
Circadian Rhythms Exhibit Characteristic Features
Phase Shifting Adjusts Circadian Rhythms to Different Day-Night Cycles
Phytochromes and Cryptochromes Entrain the Clock
PHOTOPERIODISM: MONITORING DAY LENGTH
Plants Can Be Classified by Their Photoperiodic Responses
Plants Monitor Day Length by Measuring the Length of the Night
Night Breaks Can Cancel the Effect of the Dark Period
The Circadian Clock Is Involved in Photoperiodic Timekeeping
The Coincidence Model Is Based on Oscillating Phases of Light Sensitivity
The Leaf Is the Site of Perception of the Photoperiodic Stimulus
The Floral Stimulus Is Transported via the Phloem
Phytochrome is the Primary Photoreceptor in Photoperiodism
Far-Red Light Modifies Flowering in Some Long-Day Plants
A Blue-Light Photoreceptor Also Regulates Flowering
Vernalization: Promoting Flowering with Cold
Vernalization Results in Competence to Flower at the Shoot Apical Meristem
Vernalization May Involve Epigenetic Changes in Gene Expression
BIOCHEMICAL SIGNALING INVOLVED IN FLOWERING
Grafting Studies Have Provided Evidence for a Transmissible Floral Stimulus
Indirect Induction Implies That the Floral Stimulus Is Self-Propagating
Evidence for Antiflorigen Has Been Found in Some LDPs
Attempts to Isolate Transmissible Floral Regulators Have Been Unsuccessful
Gibberellins and Ethylene Can Induce Flowering in Some Plants
The Transition to Flowering Involves Multiple Factors and Pathways
Twenty-four point twelve A Gene That Regulates the Floral Stimulus in Maize
WATER DEFICIT AND DROUGHT RESISTANCE
Drought Resistance Strategies Vary with Climatic or Soil Conditions
Decreased Leaf Area Is an Early Adaptive Response to Water Deficit
Water Deficit Stimulates Leaf Abscission
Water Deficit Enhances Root Extension into Deeper, Moist Soil
Stomata Close during Water Deficit in Response to Abscisic Acid
Water Deficit Limits Photosynthesis within the Chloroplast
Osmotic Adjustment of Cells Helps Maintain Plant Water Balance
Water Deficit Increases Resistance to Liquid-Phase Water Flow